PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G079300.1
Common NamePHAVU_010G079300g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 449aa    MW: 48613.1 Da    PI: 6.6894
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G079300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.1e-181461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT++Ed++l+ +++ +G+g+W+t +++ g+ R++k+c++rw++yl
  Phvul.010G079300.1 14 KGAWTAQEDQKLIAYIQNHGTGSWRTLPQKAGLQRCGKSCRLRWFNYL 61
                        79********************************************97 PP

2Myb_DNA-binding51.22.8e-1667112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+ ++eE+++++++ + lG++ W++Ia++++  Rt++++k++w++yl
  Phvul.010G079300.1  67 RGKLSPEEEQKIIKLQAVLGNR-WSSIAKHLP-MRTDNEIKNYWNSYL 112
                         7999******************.*********.*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.299961IPR017930Myb domain
SuperFamilySSF466891.01E-2712108IPR009057Homeodomain-like
SMARTSM007171.6E-111363IPR001005SANT/Myb domain
PfamPF002496.5E-161461IPR001005SANT/Myb domain
CDDcd001671.13E-91661No hitNo description
PROSITE profilePS5129425.57562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2465115IPR009057Homeodomain-like
SMARTSM007174.1E-1566114IPR001005SANT/Myb domain
PfamPF002493.8E-1567112IPR001005SANT/Myb domain
CDDcd001671.73E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MGRTPCCSHE ELRKGAWTAQ EDQKLIAYIQ NHGTGSWRTL PQKAGLQRCG KSCRLRWFNY  60
LRPDIKRGKL SPEEEQKIIK LQAVLGNRWS SIAKHLPMRT DNEIKNYWNS YLKRHYEKND  120
VDPSSSKPIS TASSTESKSS ELCMVPSKET VCHGPNATTH QSNHSSLPKS MSSTQLLNKV  180
ASKILASGYL EAIKSYKPVA AGNSNSNSVV KTGTGIEPEN NRDPLVSNMA SSNHSVTSAQ  240
LLNKMATSLP HKVHGLESAK AVFSKLLESS EKGETGSDGS FISSDEIGDS FISSDEGVKM  300
ATSLPHKVHG LESAKAVFSK LLESSEKGET GSDGSFISSD EIGDCLNALS AFQEAPHITK  360
MAGSPSSPSL IFDQVATPSC FSDNNEDNWQ CVSSNYVSFR YCAPSGGGDC SVSELNLGES  420
SSSTSCFLFE NADLGTCDDE ISKYIQYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28111144106B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134825.10.0hypothetical protein PHAVU_010G079300g
TrEMBLV7AMU50.0V7AMU5_PHAVU; Uncharacterized protein
STRINGGLYMA04G33210.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1699968
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-60myb domain protein 16